Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API
نویسندگان
چکیده
منابع مشابه
Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API
BACKGROUND Biochemical pathways provide an essential context for understanding comprehensive experimental data and the systematic workings of a cell. Therefore, the availability of online pathway browsers will facilitate post-genomic research, just as genome browsers have contributed to genomics. Many pathway maps have been provided online as part of public pathway databases. Most of these maps...
متن کاملPathway Projector: an Interactive Pathway Browser with Zoomable User Interface
In systems biology, the biochemical pathway provides an essential context for understanding comprehensive experimental data and the systematic workings of a cell [1]. Therefore, the availability of online pathway browsers will facilitate post-genomic research, just as genome browsers have contributed to genomics. Many pathway maps have been provided online as part of public pathway databases [2...
متن کاملMEGU: Pathway Mapping Web-Service Based on KEGG and SVG
Scientific visualization is a key technology to enhance our understanding of huge masses of omics data, especially for cell-wide, high-throughput measurements of the physiological networks. We have developed a web application that visualizes complex omics data of multiple layers simultaneously, including transcriptome, proteome, and metabolome, onto an integrated pathway diagram derived by conn...
متن کاملKEGGParser: parsing and editing KEGG pathway maps in Matlab
SUMMARY KEGG pathway database is a collection of manually drawn pathway maps accompanied with KGML format files intended for use in automatic analysis. KGML files, however, do not contain the required information for complete reproduction of all the events indicated in the static image of a pathway map. Several parsers and editors of KEGG pathways exist for processing KGML files. We introduce K...
متن کاملUsing protein motif combinations to update KEGG pathway maps and orthologue tables.
We have studied the projection of protein family data onto single bacterial translated genome as a solution to visualise relationships between families restricted to bacterial sequences. Any member of any type of family as defined in the Pfam database (domains, signatures, etc.) is considered as a protein module. Our first goal is to discover rules correlating the occurrence of modules with bio...
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ژورنال
عنوان ژورنال: PLoS ONE
سال: 2009
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0007710